Florida Atlantic University has a reputation on PhD research work. There are many outstanding research has been conducted from this university. Although the number of PhD students in this university is very low in comparison with number of graduate student and undergraduate students, the quality of the doctoral program of this university is very high. The doctoral programs offered by this university are:
- Aerospace Engineering
- Agricultural and Biological Engineering
- Agricultural Education and Communication
- Agronomy
- Animal Sciences
- Anthropology
- Art History
- Astronomy
- Biochemistry and Molecular Biology
- Biomedical Engineering
- Biostatistics
- Botany
- Business Administration in Accounting
- Business Administration in Decision and Information Sciences
- Business Administration in Finance
- Business Administration in Insurance
- Business Administration in Management
- Business Administration in Marketing
- Business Administration in Real Estate and Urban Analysis
- Chemical Engineering
- Chemistry
- Civil Engineering
- Classical Studies
- Coastal and Oceanographic Engineering
- Communication Sciences and Disorders
- Computer Engineering
- Counseling Psychology
- Criminology and Law
- Curriculum and Instruction
- Curriculum and Instruction
- Design, Construction and Planning
- Economics
- Educational Leadership
- Educational Leadership
- Electrical and Computer Engineering
- English
- Entomology and Nematology
- Environmental Engineering Sciences
- Epidemiology
- Fisheries and Aquatic Sciences
- Food and Resource Economics
- Food Science and Human Nutrition in Food Science
- Food Science and Human Nutrition in Nutritional Science
- Forest Resources and Conservation- Geomatics
- Foundations of Education
- Foundations of Education
- Geography
- Geology
- German
- Health and Human Performance- Behavioral Sciences
- Health and Human Performance- Exercise Physiology
- Health and Human Performance- Health Behavior
- Health and Human Performance- Recreation, Parks and Tourism
- Health and Human Performance- Sport Management
- Health Services Research
- Higher Education Administration
- Higher Education Administration
- History
- Horticultural Science- Environmental Horticulture
- Horticultural Science- Horticultural Sciences
- Industrial and Systems Engineering
- Interdisciplinary Ecology
- Linguistics
- Marriage and Family Counseling
- Marriage and Family Counseling
- Mass Communication
- Materials Science and Engineering
- Mathematics
- Mechanical Engineering
- Medical Sciences- Biochemistry and Molecular Biology
- Medical Sciences- Genetics
- Medical Sciences- Immunology and Microbiology
- Medical Sciences- Molecular Cell Biology
- Medical Sciences- Neuroscience
- Medical Sciences- Physiology and Pharmacology
- Mental Health Counseling
- Mental Health Counseling
- Microbiology and Cell Science
- Music Education
- Music- Composition
- Music- Music History and Literature
- Nuclear Engineering Sciences
- Nursing Sciences
- Pharmaceutical Sciences- Medicinal Chemistry
- Pharmaceutical Sciences- Pharmacodynamics
- Pharmaceutical Sciences- Pharmacy
- Pharmaceutical Sciences- Pharmacy Health Care Administration
- Philosophy
- Physics
- Plant Molecular and Cellular Biology
- Plant Pathology
- Political Science
- Political Science - International Relations
- Psychology- Clinical and Health Psychology
- Psychology- Psychology
- Rehabilitation Science
- Religious Studies
- Research and Evaluation Methodology
- Research and Evaluation Methodology
- Romance Languages- French
- Romance Languages- Spanish
- School Counseling and Guidance
- School Counseling and Guidance
- School Psychology
- School Psychology
- Sociology
- Soil and Water Science
- Special Education
- Special Education
- Statistics
- Student Personnel in Higher Education
- Student Personnel in Higher Education
- Veterinary Medical Sciences
- Wildlife Ecology and Conservation
- Zoology
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